12 research outputs found
Photostability Mechanisms in Human γB-Crystallin: Role of the Tyrosine Corner Unveiled by Quantum Mechanics and Hybrid Quantum Mechanics/Molecular Mechanics Methodologies
The tyrosine corner is proposed as a featured element
to enhance
photostability in human γB-crystallin when exposed to UV irradiation.
Different ultrafast processes were studied by multiconfigurational
quantum chemistry coupled to molecular mechanics: photoinduced singlet–singlet
energy, electron and proton transfer, as well as population and evolution
of triplet states. The minimum energy paths indicate two possible
UV photoinduced events: forward–backward proton-coupled electron transfer providing to the system a mechanism for ultrafast internal
conversion, and energy transfer, leading to fluorescence or phosphorescence.
The obtained results are in agreement with the available experimental
data, being in line with the proposed photoinduced processes for the
different tyrosine environments within γB-crystallin
Photoinduced Proton Transfer as a Possible Mechanism for Highly Efficient Excited-State Deactivation in Proteins
CASSCF//CASPT2 pathways for a two-glycine minimal model system show that photoinduced electron-driven forward and backward proton transfer could play an important role for the stability of proteins against damage by UV radiation, when a hydrogen bond is located between the two amino acids. The overall photoinduced process involves two electron and proton transfer processes (forward and backward) and results in the reformation of the initial closed-shell electronic structure of the system
Mechanochemical Tuning of Pyrene Absorption Spectrum Using Force Probes
Control of absorption
spectra in chromophores is a fundamental
aspect of many photochemical and photophysical processes as it constitutes
the first step of the global photoinduced process. Here we explore
the use of mechanical forces to modulate the light absorption process.
Specifically, we develop a computational formalism for determining
the type of mechanical forces permitting a global tuning of the absorption
spectrum. This control extends to the excitation wavelength, absorption
bands overlap, and oscillator strength. The determination of these
optimal forces permits us to rationally guide the design of new mechano-responsive
chromophores. Pyrene has been chosen as the case study for applying
these computational tools because significant absorption spectra information
is available for the chromophore as well as for different strained
derivatives. Additionally, pyrene presents a large flexibility, which
makes it a good system to test the inclusion of force probes as the
strategy to exert forces on the system
Modulating Nitric Oxide Release by <i>S</i>-Nitrosothiol Photocleavage: Mechanism and Substituent Effects
The photochemistry and photophysics of a series of <i>S</i>-nitrosothiols (RSNOs) have
been studied computationally. The photocleavage mechanism of the model
compound CH<sub>3</sub>SNO to release CH<sub>3</sub>S· and ·NO
was studied at the CASPT2 level resulting in a barrierless process
when irradiating in the visible region (S<sub>1</sub>), in the near
UV region (S<sub>2</sub>) and for photosensitized (T<sub>1</sub>)
reaction. The absorption energy required to initiate photocleavage
was calculated at the CASPT2 and B3P86 levels showing the possibility
of the modulation of NO release by RSNO photoactivation as a function
of the substituent R. Good correlations between the wavelengths of
the lowest energy <sup>1</sup>(<i>n</i>,π*) and <sup>1</sup>(π,π*) transitions of aryl <i>S</i>-nitrosothiols
and the corresponding Hammett constants of the substituents have been
obtained
Chiral Hydrogen Bond Environment Providing Unidirectional Rotation in Photoactive Molecular Motors
Generation of a chiral hydrogen bond
environment in efficient molecular
photoswitches is proposed as a novel strategy for the design of photoactive
molecular motors. Here, the following strategy is used to design a
retinal-based motor presenting singular properties: (i) a single excitation
wavelength is needed to complete the unidirectional rotation process
(360°); (ii) the absence of any thermal step permits the process
to take place at low temperatures; and (iii) the ultrafast process
permits high rotational frequencies
Study of Model Systems for Bilirubin and Bilin Chromophores: Determination and Modification of Thermal and Photochemical Properties
Bilin
chromophores and bilirubin are involved in relevant biological
functions such as light perception in plants and as protective agents
against Alzheimer and other diseases. Despite their extensive use,
a deep rationalization of the main factors controlling the thermal
and photochemical properties has not been performed yet, which in
turn hampers further applications of these versatile molecules. In
an effort to understand those factors and allow control of the relevant
properties, a combined experimental and computational study has been
carried out for diverse model systems to understand the interconversion
between <i>Z</i> and <i>E</i> isomers. In this
study, we have demonstrated the crucial role of steric hindrance and
hydrogen-bond interactions in thermal stability and the ability to
control them by designing novel compounds. We also determined several
photochemical properties and studied the photodynamics of two model
systems in more detail, observing a fast relaxation of the excited
state shorter than 2 ps in both cases. Finally, the computational
study allowed us to rationalize the experimental evidence
Toward an Optomechanical Control of Photoswitches by Tuning Their Spectroscopical Properties: Structural and Dynamical Insights into Azobenzene
A new methodology to calculate efficiently
the absorption spectrum
of a single molecule when subjected to mechanical stress is presented.
As example, the developed methodology was applied to <i>cis-</i> and <i>trans</i>-azobenzene, commonly used as photoswitch
in a wide variety of applications. The results show that both <sup>1</sup>(<i>n</i>,π*) and <sup>1</sup>(π,π*)
optical transitions can be efficiently modulated by applying an external
force. A structural analysis was performed to evaluate the role of
each internal coordinate in the excitation process, taking into account
the application of external forces at different positions of azobenzene.
Moreover, stress–strain curves were calculated in order to
determine the maximum applicable forces within the elastic region,
highlighting notable differences between the mechanical properties
of <i>cis</i>- and <i>trans</i>-azobenzene conformers.
The optomechanical work obtained by elongation and compression steps
is calculated for a single azobenzene molecule and compared to available
experimental data. Finally, the implications derived from the application
of azobenzene as main chain component of a linear polymer acting as
a photoinduced motor are discussed
C–H Functionalization of BN-Aromatics Promoted by Addition of Organolithium Compounds to the Boron Atom
Addition of an organolithium
compound to a BN-phenanthrene with
embedded B and N atoms is proposed to result in coordination of RLi
to the boron atom. This coordination, supported by NMR spectroscopy
and DFT calculations, increases the nucleophilicity of the system
in the β position to the N atom and is therefore a useful tool
for promoting regioselective C–H functionalization of BN aromatics
Mechanical Forces Alter Conical Intersections Topology
Photoreactivity
can be influenced by mechanical forces acting over
a reacting chromophore. Nevertheless, the specific effect of the external
forces in the photoreaction mechanism remains essentially unknown.
Conical intersections are key structures in photochemistry, as they
constitute the funnels connecting excited and ground states. These
crossing points are well known to provide valuable information on
molecular photoreactivity, including crucial aspects as potential
photoproducts which may be predicted by just inspection of the branching
plane vectors. Here, we outline a general framework for understanding
the effect of mechanical forces on conical intersections and their
implications on photoreactivity. Benzene S<sub>1</sub>/S<sub>0</sub> conical intersection topology can be dramatically altered by applying
less than 1 nN force, making the peaked pattern of the intersection
become a sloped one, also provoking the transition state in the excited
state to disappear. Both effects can be related to an increase in
the photostability as the conical intersection becomes more accessible,
and its topology in this case favors the recovery of the initial reactant.
The results indicate that the presence of external forces acting over
a chromophore have to be considered as a potential method for photochemical
reactivity control
Synthesis, Optical Properties, and Regioselective Functionalization of 4a-Aza-10a-boraphenanthrene
4a-Aza-10a-boraphenanthrene
has been synthesized in only four steps
from commercially available materials with a remarkable overall yield
of 62%. In contrast to other BN-isosteres of phenathrene, this isomer
is weakly fluorescent, which has been explained by means of computational
studies that found a low energy conical intersection for the nonradiative
deactivation of the excited state. Moreover, a completely regioselective
functionalization of 4a-aza-10a-boraphenanthrene at C-1 by reaction
with activated electrophiles has been achieved